Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BVPH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BVPH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai

The index file is older than the data file: 1241_BVPH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BVPH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 102245141 total, 70439 skipped (flags/unmapped)
Fragments: 51250446 total (50880002 tlen-paired, 3643 hash-paired, 483 singletons, 17173 discordant, 349145 orphans, 11719 too large [>5000 bp], 21104857 duplicates)
Reads: 110801095 total, 60950 skipped (flags/unmapped)
Fragments: 55541888 total (55156891 tlen-paired, 4756 hash-paired, 547 singletons, 11528 discordant, 368166 orphans, 12541 too large [>5000 bp], 22583569 duplicates)
Reads: 121032374 total, 67261 skipped (flags/unmapped)
Fragments: 60668941 total (60210616 tlen-paired, 6362 hash-paired, 430 singletons, 17244 discordant, 434289 orphans, 30975 too large [>5000 bp], 25131071 duplicates)
Reads: 122410908 total, 118444 skipped (flags/unmapped)
Fragments: 61493362 total (60413242 tlen-paired, 3482 hash-paired, 429 singletons, 209278 discordant, 866931 orphans, 86550 too large [>5000 bp], 25451197 duplicates)