Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BVTH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BVTH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BVTH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BVTH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 92710776 total, 63547 skipped (flags/unmapped)
Fragments: 46492840 total (46113447 tlen-paired, 3348 hash-paired, 430 singletons, 15664 discordant, 359951 orphans, 10965 too large [>5000 bp], 18546659 duplicates)
Reads: 99586049 total, 56354 skipped (flags/unmapped)
Fragments: 49943117 total (49548249 tlen-paired, 4498 hash-paired, 474 singletons, 10871 discordant, 379025 orphans, 11480 too large [>5000 bp], 19580006 duplicates)
Reads: 109333994 total, 59401 skipped (flags/unmapped)
Fragments: 54832163 total (54388208 tlen-paired, 4360 hash-paired, 333 singletons, 15670 discordant, 423592 orphans, 17096 too large [>5000 bp], 22006436 duplicates)
Reads: 110801737 total, 102925 skipped (flags/unmapped)
Fragments: 55717354 total (54573053 tlen-paired, 3258 hash-paired, 483 singletons, 223007 discordant, 917553 orphans, 91070 too large [>5000 bp], 22302785 duplicates)