Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BG4S-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] Count mode: frac
The index file is older than the data file: 1241_BG4S-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BG4S-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BG4S-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73839094 total, 58473 skipped (flags/unmapped)
Fragments: 37102570 total (36643861 tlen-paired, 2962 hash-paired, 316 singletons, 9532 discordant, 445899 orphans, 10848 too large [>5000 bp], 15545442 duplicates)
Reads: 78645744 total, 48124 skipped (flags/unmapped)
Fragments: 39532962 total (39039449 tlen-paired, 2791 hash-paired, 477 singletons, 6868 discordant, 483377 orphans, 7775 too large [>5000 bp], 16282420 duplicates)
Reads: 87034198 total, 51224 skipped (flags/unmapped)
Fragments: 43747911 total (43179342 tlen-paired, 5087 hash-paired, 280 singletons, 10166 discordant, 553036 orphans, 20234 too large [>5000 bp], 18377743 duplicates)
Reads: 89399858 total, 97980 skipped (flags/unmapped)
Fragments: 45170210 total (43523519 tlen-paired, 4185 hash-paired, 317 singletons, 334726 discordant, 1307463 orphans, 134619 too large [>5000 bp], 18763136 duplicates)