Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_B2WH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_B2WH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_B2WH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_B2WH-N1-BDNA-1_A23TY32LT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 33095206 total, 25055 skipped (flags/unmapped)
Fragments: 16604824 total (16450840 tlen-paired, 1432 hash-paired, 152 singletons, 5681 discordant, 146719 orphans, 3687 too large [>5000 bp], 6048544 duplicates)
Reads: 35743370 total, 23727 skipped (flags/unmapped)
Fragments: 17936023 total (17760551 tlen-paired, 2858 hash-paired, 137 singletons, 5341 discordant, 167136 orphans, 7435 too large [>5000 bp], 6514459 duplicates)
Reads: 36255185 total, 22705 skipped (flags/unmapped)
Fragments: 18190938 total (18025782 tlen-paired, 1581 hash-paired, 182 singletons, 4093 discordant, 159300 orphans, 5043 too large [>5000 bp], 6457390 duplicates)
Reads: 39502814 total, 41320 skipped (flags/unmapped)
Fragments: 19884146 total (19404559 tlen-paired, 1093 hash-paired, 144 singletons, 95638 discordant, 382712 orphans, 38029 too large [>5000 bp], 7215061 duplicates)