Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8D-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8D-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8D-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV8D-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 48139701 total, 32342 skipped (flags/unmapped)
Fragments: 24120750 total (23967391 tlen-paired, 2163 hash-paired, 200 singletons, 7479 discordant, 143517 orphans, 4788 too large [>5000 bp], 7573973 duplicates)
Reads: 51960578 total, 27195 skipped (flags/unmapped)
Fragments: 26035879 total (25881309 tlen-paired, 1747 hash-paired, 197 singletons, 5258 discordant, 147368 orphans, 4595 too large [>5000 bp], 8006230 duplicates)
Reads: 51238661 total, 28696 skipped (flags/unmapped)
Fragments: 25675209 total (25507427 tlen-paired, 3036 hash-paired, 186 singletons, 6761 discordant, 157799 orphans, 8766 too large [>5000 bp], 8098845 duplicates)
Reads: 56593055 total, 48685 skipped (flags/unmapped)
Fragments: 28404871 total (27989819 tlen-paired, 1413 hash-paired, 187 singletons, 80631 discordant, 332821 orphans, 33818 too large [>5000 bp], 8978072 duplicates)