Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BL7Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BL7Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BL7Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BL7Z-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72743435 total, 41479 skipped (flags/unmapped)
Fragments: 36445508 total (36228945 tlen-paired, 3686 hash-paired, 387 singletons, 6261 discordant, 206229 orphans, 8778 too large [>5000 bp], 11598427 duplicates)
Reads: 67376965 total, 47878 skipped (flags/unmapped)
Fragments: 33755937 total (33547638 tlen-paired, 3144 hash-paired, 313 singletons, 8940 discordant, 195902 orphans, 6714 too large [>5000 bp], 11020442 duplicates)
Reads: 72106456 total, 42160 skipped (flags/unmapped)
Fragments: 36131837 total (35890991 tlen-paired, 3419 hash-paired, 246 singletons, 7837 discordant, 229344 orphans, 15106 too large [>5000 bp], 11818492 duplicates)
Reads: 78923355 total, 69353 skipped (flags/unmapped)
Fragments: 39617597 total (39018917 tlen-paired, 2531 hash-paired, 320 singletons, 116747 discordant, 479082 orphans, 49105 too large [>5000 bp], 12989630 duplicates)