Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGI2-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGI2-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BGI2-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BGI2-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74862402 total, 71157 skipped (flags/unmapped)
Fragments: 37501571 total (37248077 tlen-paired, 3738 hash-paired, 313 singletons, 14929 discordant, 234514 orphans, 11465 too large [>5000 bp], 11928864 duplicates)
Reads: 80055366 total, 65290 skipped (flags/unmapped)
Fragments: 40109020 total (39832528 tlen-paired, 3487 hash-paired, 256 singletons, 13043 discordant, 259706 orphans, 15999 too large [>5000 bp], 12806693 duplicates)
Reads: 80592990 total, 60354 skipped (flags/unmapped)
Fragments: 40376822 total (40121060 tlen-paired, 4069 hash-paired, 404 singletons, 10767 discordant, 240522 orphans, 9959 too large [>5000 bp], 12583003 duplicates)
Reads: 87473041 total, 91168 skipped (flags/unmapped)
Fragments: 43894892 total (43268903 tlen-paired, 2130 hash-paired, 364 singletons, 117722 discordant, 505773 orphans, 49113 too large [>5000 bp], 14057088 duplicates)