Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BZC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BZC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BZC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BZC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 51493126 total, 40503 skipped (flags/unmapped)
Fragments: 25804692 total (25627553 tlen-paired, 1779 hash-paired, 264 singletons, 6915 discordant, 168181 orphans, 5842 too large [>5000 bp], 8523287 duplicates)
Reads: 54774904 total, 34752 skipped (flags/unmapped)
Fragments: 27451864 total (27267946 tlen-paired, 2423 hash-paired, 227 singletons, 4993 discordant, 176275 orphans, 6463 too large [>5000 bp], 8863510 duplicates)
Reads: 60442060 total, 58655 skipped (flags/unmapped)
Fragments: 30365155 total (29826657 tlen-paired, 2407 hash-paired, 218 singletons, 103924 discordant, 431949 orphans, 42631 too large [>5000 bp], 10047845 duplicates)
Reads: 60187361 total, 37466 skipped (flags/unmapped)
Fragments: 30165017 total (29948484 tlen-paired, 4338 hash-paired, 179 singletons, 7090 discordant, 204926 orphans, 12483 too large [>5000 bp], 9973459 duplicates)