Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_OP3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_OP3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_OP3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_OP3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69041577 total, 53066 skipped (flags/unmapped)
Fragments: 34589640 total (34364968 tlen-paired, 3913 hash-paired, 332 singletons, 8874 discordant, 211553 orphans, 10558 too large [>5000 bp], 12475736 duplicates)
Reads: 73584534 total, 44295 skipped (flags/unmapped)
Fragments: 36873556 total (36639360 tlen-paired, 3236 hash-paired, 312 singletons, 6443 discordant, 224205 orphans, 8822 too large [>5000 bp], 13065271 duplicates)
Reads: 80957844 total, 72327 skipped (flags/unmapped)
Fragments: 40661451 total (39990610 tlen-paired, 1834 hash-paired, 312 singletons, 129316 discordant, 539379 orphans, 51153 too large [>5000 bp], 14692390 duplicates)
Reads: 80491868 total, 46421 skipped (flags/unmapped)
Fragments: 40336940 total (40066092 tlen-paired, 3067 hash-paired, 243 singletons, 8986 discordant, 258552 orphans, 15181 too large [>5000 bp], 14593454 duplicates)