Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BTF3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BTF3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BTF3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BTF3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74167396 total, 42866 skipped (flags/unmapped)
Fragments: 37164170 total (36930554 tlen-paired, 3595 hash-paired, 344 singletons, 7565 discordant, 222112 orphans, 9323 too large [>5000 bp], 12252673 duplicates)
Reads: 69623496 total, 48569 skipped (flags/unmapped)
Fragments: 34888879 total (34656138 tlen-paired, 3612 hash-paired, 291 singletons, 10752 discordant, 218086 orphans, 7773 too large [>5000 bp], 11685619 duplicates)
Reads: 81300428 total, 43527 skipped (flags/unmapped)
Fragments: 40745466 total (40466587 tlen-paired, 2149 hash-paired, 228 singletons, 11253 discordant, 265249 orphans, 15723 too large [>5000 bp], 13746633 duplicates)
Reads: 81705279 total, 70341 skipped (flags/unmapped)
Fragments: 41027945 total (40374620 tlen-paired, 2531 hash-paired, 325 singletons, 124796 discordant, 525673 orphans, 52523 too large [>5000 bp], 13856391 duplicates)