Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_C3I-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_C3I-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_C3I-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_C3I-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58288017 total, 43619 skipped (flags/unmapped)
Fragments: 29226910 total (28994142 tlen-paired, 2545 hash-paired, 269 singletons, 7407 discordant, 222547 orphans, 6697 too large [>5000 bp], 10063291 duplicates)
Reads: 61963846 total, 36332 skipped (flags/unmapped)
Fragments: 31074685 total (30833832 tlen-paired, 2039 hash-paired, 272 singletons, 5144 discordant, 233398 orphans, 5907 too large [>5000 bp], 10448716 duplicates)
Reads: 67920962 total, 41301 skipped (flags/unmapped)
Fragments: 34063569 total (33769564 tlen-paired, 3845 hash-paired, 210 singletons, 7997 discordant, 281953 orphans, 17343 too large [>5000 bp], 11735562 duplicates)
Reads: 68802063 total, 64634 skipped (flags/unmapped)
Fragments: 34608353 total (33859614 tlen-paired, 3190 hash-paired, 299 singletons, 146362 discordant, 598888 orphans, 59955 too large [>5000 bp], 11903134 duplicates)