Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_UZR-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_UZR-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_UZR-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_UZR-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98410550 total, 68685 skipped (flags/unmapped)
Fragments: 49314676 total (48979440 tlen-paired, 4365 hash-paired, 477 singletons, 17052 discordant, 313342 orphans, 13166 too large [>5000 bp], 17550382 duplicates)
Reads: 105179464 total, 58443 skipped (flags/unmapped)
Fragments: 52709822 total (52372026 tlen-paired, 4152 hash-paired, 394 singletons, 11711 discordant, 321539 orphans, 11655 too large [>5000 bp], 18561657 duplicates)
Reads: 114535890 total, 100087 skipped (flags/unmapped)
Fragments: 57513988 total (56612694 tlen-paired, 3257 hash-paired, 436 singletons, 167852 discordant, 729749 orphans, 69006 too large [>5000 bp], 20705396 duplicates)
Reads: 114452562 total, 64168 skipped (flags/unmapped)
Fragments: 57359919 total (56964417 tlen-paired, 4268 hash-paired, 392 singletons, 17266 discordant, 373576 orphans, 21262 too large [>5000 bp], 20635566 duplicates)