Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BB9G-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BB9G-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BB9G-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BB9G-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 43967255 total, 30687 skipped (flags/unmapped)
Fragments: 22021804 total (21896515 tlen-paired, 1714 hash-paired, 160 singletons, 6581 discordant, 116834 orphans, 4977 too large [>5000 bp], 7313733 duplicates)
Reads: 46937559 total, 25165 skipped (flags/unmapped)
Fragments: 23511744 total (23385733 tlen-paired, 1858 hash-paired, 225 singletons, 4327 discordant, 119601 orphans, 4366 too large [>5000 bp], 7612840 duplicates)
Reads: 51116012 total, 27436 skipped (flags/unmapped)
Fragments: 25607154 total (25456288 tlen-paired, 2019 hash-paired, 158 singletons, 6331 discordant, 142358 orphans, 8392 too large [>5000 bp], 8495565 duplicates)
Reads: 51506362 total, 43418 skipped (flags/unmapped)
Fragments: 25840885 total (25502299 tlen-paired, 1963 hash-paired, 178 singletons, 63717 discordant, 272728 orphans, 27040 too large [>5000 bp], 8592149 duplicates)