Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BL9F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BL9F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BL9F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BL9F-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77229287 total, 55727 skipped (flags/unmapped)
Fragments: 38670676 total (38469413 tlen-paired, 2701 hash-paired, 346 singletons, 11702 discordant, 186514 orphans, 9534 too large [>5000 bp], 12190794 duplicates)
Reads: 82220282 total, 45645 skipped (flags/unmapped)
Fragments: 41171783 total (40973115 tlen-paired, 3549 hash-paired, 329 singletons, 7914 discordant, 186876 orphans, 9138 too large [>5000 bp], 12818231 duplicates)
Reads: 90089309 total, 76481 skipped (flags/unmapped)
Fragments: 45169325 total (44671289 tlen-paired, 2540 hash-paired, 286 singletons, 91348 discordant, 403862 orphans, 39163 too large [>5000 bp], 14397678 duplicates)
Reads: 89753262 total, 50373 skipped (flags/unmapped)
Fragments: 44944831 total (44697989 tlen-paired, 3497 hash-paired, 301 singletons, 11722 discordant, 231322 orphans, 22425 too large [>5000 bp], 14279464 duplicates)