Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BC6L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BC6L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BC6L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BC6L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71784440 total, 48473 skipped (flags/unmapped)
Fragments: 35952585 total (35757762 tlen-paired, 3087 hash-paired, 282 singletons, 8289 discordant, 183165 orphans, 7122 too large [>5000 bp], 12339403 duplicates)
Reads: 77292398 total, 41659 skipped (flags/unmapped)
Fragments: 38713853 total (38512275 tlen-paired, 2785 hash-paired, 361 singletons, 5820 discordant, 192612 orphans, 8003 too large [>5000 bp], 13041296 duplicates)
Reads: 76394755 total, 41525 skipped (flags/unmapped)
Fragments: 38267715 total (38041558 tlen-paired, 5284 hash-paired, 236 singletons, 7169 discordant, 213468 orphans, 15752 too large [>5000 bp], 13173515 duplicates)
Reads: 84018778 total, 67789 skipped (flags/unmapped)
Fragments: 42154030 total (41593811 tlen-paired, 2972 hash-paired, 300 singletons, 109220 discordant, 447727 orphans, 45478 too large [>5000 bp], 14540723 duplicates)