Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_0BO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0BO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0BO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_0BO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73873257 total, 50816 skipped (flags/unmapped)
Fragments: 37016118 total (36775306 tlen-paired, 2809 hash-paired, 309 singletons, 12046 discordant, 225648 orphans, 8081 too large [>5000 bp], 12762512 duplicates)
Reads: 79038390 total, 42062 skipped (flags/unmapped)
Fragments: 39605861 total (39363429 tlen-paired, 2982 hash-paired, 325 singletons, 8718 discordant, 230407 orphans, 7669 too large [>5000 bp], 13358711 duplicates)
Reads: 78587843 total, 46319 skipped (flags/unmapped)
Fragments: 39382373 total (39105903 tlen-paired, 3625 hash-paired, 245 singletons, 10817 discordant, 261783 orphans, 19403 too large [>5000 bp], 13642331 duplicates)
Reads: 86649072 total, 72663 skipped (flags/unmapped)
Fragments: 43494688 total (42852893 tlen-paired, 2399 hash-paired, 284 singletons, 123569 discordant, 515543 orphans, 51430 too large [>5000 bp], 15078877 duplicates)