Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_B2K-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_B2K-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_B2K-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_B2K-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82482006 total, 55448 skipped (flags/unmapped)
Fragments: 41306350 total (41085901 tlen-paired, 3023 hash-paired, 341 singletons, 11660 discordant, 205425 orphans, 9812 too large [>5000 bp], 13596202 duplicates)
Reads: 89760121 total, 45336 skipped (flags/unmapped)
Fragments: 44956004 total (44730672 tlen-paired, 2878 hash-paired, 354 singletons, 8075 discordant, 214025 orphans, 8578 too large [>5000 bp], 14551420 duplicates)
Reads: 96746982 total, 80525 skipped (flags/unmapped)
Fragments: 48522222 total (47941455 tlen-paired, 2511 hash-paired, 344 singletons, 110397 discordant, 467515 orphans, 44936 too large [>5000 bp], 16109868 duplicates)
Reads: 87978540 total, 50503 skipped (flags/unmapped)
Fragments: 44064889 total (43812105 tlen-paired, 3434 hash-paired, 286 singletons, 10629 discordant, 238435 orphans, 18490 too large [>5000 bp], 14593464 duplicates)