Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BYC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1241_BYC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BYC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BYC8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80926871 total, 63187 skipped (flags/unmapped)
Fragments: 40525455 total (40299843 tlen-paired, 4804 hash-paired, 300 singletons, 11900 discordant, 208608 orphans, 10841 too large [>5000 bp], 13699360 duplicates)
Reads: 86401688 total, 48703 skipped (flags/unmapped)
Fragments: 43273468 total (43052052 tlen-paired, 2259 hash-paired, 410 singletons, 8054 discordant, 210693 orphans, 8576 too large [>5000 bp], 14348148 duplicates)
Reads: 85749297 total, 51476 skipped (flags/unmapped)
Fragments: 42951118 total (42696320 tlen-paired, 6135 hash-paired, 271 singletons, 10494 discordant, 237898 orphans, 16877 too large [>5000 bp], 14596145 duplicates)
Reads: 94022158 total, 84976 skipped (flags/unmapped)
Fragments: 47155696 total (46570311 tlen-paired, 2825 hash-paired, 341 singletons, 111688 discordant, 470531 orphans, 48331 too large [>5000 bp], 16062360 duplicates)