Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BN20-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1241_BN20-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BN20-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai


[W::hts_idx_load3] The index file is older than the data file: 1241_BN20-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 98259940 total, 66307 skipped (flags/unmapped)
Fragments: 49230046 total (48918704 tlen-paired, 3539 hash-paired, 442 singletons, 17484 discordant, 289877 orphans, 11930 too large [>5000 bp], 17553821 duplicates)
Reads: 106591981 total, 56631 skipped (flags/unmapped)
Fragments: 53404126 total (53091447 tlen-paired, 3149 hash-paired, 389 singletons, 12244 discordant, 296897 orphans, 12192 too large [>5000 bp], 18727089 duplicates)
Reads: 104620109 total, 59468 skipped (flags/unmapped)
Fragments: 52421739 total (52070518 tlen-paired, 4912 hash-paired, 349 singletons, 14670 discordant, 331290 orphans, 24401 too large [>5000 bp], 18821552 duplicates)
Reads: 114904571 total, 98482 skipped (flags/unmapped)
Fragments: 57658210 total (56864360 tlen-paired, 3723 hash-paired, 382 singletons, 150884 discordant, 638861 orphans, 64456 too large [>5000 bp], 20750019 duplicates)