Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BV00-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV00-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV00-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BV00-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 91213219 total, 80661 skipped (flags/unmapped)
Fragments: 45735169 total (45199771 tlen-paired, 3497 hash-paired, 307 singletons, 104633 discordant, 426961 orphans, 44744 too large [>5000 bp], 15506046 duplicates)
Reads: 82904235 total, 43403 skipped (flags/unmapped)
Fragments: 41517131 total (41320558 tlen-paired, 2735 hash-paired, 364 singletons, 5966 discordant, 187508 orphans, 7221 too large [>5000 bp], 13727938 duplicates)
Reads: 77507720 total, 52276 skipped (flags/unmapped)
Fragments: 38809820 total (38619795 tlen-paired, 2648 hash-paired, 310 singletons, 8559 discordant, 178508 orphans, 7311 too large [>5000 bp], 13087780 duplicates)
Reads: 82766746 total, 48008 skipped (flags/unmapped)
Fragments: 41450979 total (41222253 tlen-paired, 3782 hash-paired, 268 singletons, 7710 discordant, 216966 orphans, 17007 too large [>5000 bp], 14012714 duplicates)