Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_5IT-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_5IT-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_5IT-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_5IT-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 101937925 total, 76511 skipped (flags/unmapped)
Fragments: 51041484 total (50775451 tlen-paired, 6443 hash-paired, 416 singletons, 14884 discordant, 244290 orphans, 11576 too large [>5000 bp], 15685245 duplicates)
Reads: 109139678 total, 62542 skipped (flags/unmapped)
Fragments: 54650770 total (54386861 tlen-paired, 4701 hash-paired, 473 singletons, 10038 discordant, 248697 orphans, 12383 too large [>5000 bp], 16595868 duplicates)
Reads: 118436997 total, 63803 skipped (flags/unmapped)
Fragments: 59313176 total (59006202 tlen-paired, 5739 hash-paired, 385 singletons, 14453 discordant, 286397 orphans, 16812 too large [>5000 bp], 18437481 duplicates)
Reads: 119346820 total, 106117 skipped (flags/unmapped)
Fragments: 59840187 total (59160793 tlen-paired, 5645 hash-paired, 402 singletons, 126156 discordant, 547191 orphans, 53961 too large [>5000 bp], 18596386 duplicates)