Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_DKH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_DKH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DKH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_DKH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77769340 total, 53520 skipped (flags/unmapped)
Fragments: 38955940 total (38725753 tlen-paired, 2624 hash-paired, 430 singletons, 11529 discordant, 215604 orphans, 9987 too large [>5000 bp], 12852180 duplicates)
Reads: 82673437 total, 43805 skipped (flags/unmapped)
Fragments: 41416673 total (41189002 tlen-paired, 2136 hash-paired, 442 singletons, 7765 discordant, 217328 orphans, 7028 too large [>5000 bp], 13471236 duplicates)
Reads: 90612678 total, 49434 skipped (flags/unmapped)
Fragments: 45397398 total (45119782 tlen-paired, 3150 hash-paired, 316 singletons, 11404 discordant, 262746 orphans, 15755 too large [>5000 bp], 15055756 duplicates)
Reads: 91024585 total, 79162 skipped (flags/unmapped)
Fragments: 45676689 total (45050271 tlen-paired, 2392 hash-paired, 401 singletons, 117993 discordant, 505632 orphans, 49039 too large [>5000 bp], 15189354 duplicates)