Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BQAI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQAI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQAI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BQAI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77014229 total, 44778 skipped (flags/unmapped)
Fragments: 38584536 total (38358271 tlen-paired, 3064 hash-paired, 359 singletons, 8316 discordant, 214526 orphans, 7632 too large [>5000 bp], 12914231 duplicates)
Reads: 71472620 total, 53396 skipped (flags/unmapped)
Fragments: 35804328 total (35583869 tlen-paired, 2776 hash-paired, 374 singletons, 11789 discordant, 205520 orphans, 8231 too large [>5000 bp], 12177907 duplicates)
Reads: 76093810 total, 47874 skipped (flags/unmapped)
Fragments: 38126083 total (37863850 tlen-paired, 3398 hash-paired, 243 singletons, 10391 discordant, 248201 orphans, 21107 too large [>5000 bp], 13040880 duplicates)
Reads: 83810249 total, 79117 skipped (flags/unmapped)
Fragments: 42051356 total (41469054 tlen-paired, 3671 hash-paired, 346 singletons, 112165 discordant, 466120 orphans, 47443 too large [>5000 bp], 14410189 duplicates)