Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BN3C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BN3C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BN3C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BN3C-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70364217 total, 50324 skipped (flags/unmapped)
Fragments: 35249584 total (35037936 tlen-paired, 2330 hash-paired, 321 singletons, 9509 discordant, 199488 orphans, 7267 too large [>5000 bp], 11064761 duplicates)
Reads: 74754821 total, 41304 skipped (flags/unmapped)
Fragments: 37451014 total (37236791 tlen-paired, 2414 hash-paired, 358 singletons, 6198 discordant, 205253 orphans, 8550 too large [>5000 bp], 11571060 duplicates)
Reads: 82124307 total, 74486 skipped (flags/unmapped)
Fragments: 41218320 total (40617166 tlen-paired, 2109 hash-paired, 387 singletons, 114720 discordant, 483938 orphans, 48753 too large [>5000 bp], 13040756 duplicates)
Reads: 81985734 total, 44683 skipped (flags/unmapped)
Fragments: 41075763 total (40812954 tlen-paired, 3070 hash-paired, 267 singletons, 9792 discordant, 249680 orphans, 19736 too large [>5000 bp], 12971333 duplicates)