Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_570-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 1241_570-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_570-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_570-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66827500 total, 48116 skipped (flags/unmapped)
Fragments: 33464146 total (33284190 tlen-paired, 3014 hash-paired, 249 singletons, 8858 discordant, 167835 orphans, 9588 too large [>5000 bp], 10745439 duplicates)
Reads: 70683912 total, 41813 skipped (flags/unmapped)
Fragments: 35405315 total (35193072 tlen-paired, 2778 hash-paired, 214 singletons, 8308 discordant, 200943 orphans, 16313 too large [>5000 bp], 11404092 duplicates)
Reads: 71613175 total, 36497 skipped (flags/unmapped)
Fragments: 35869406 total (35685400 tlen-paired, 2285 hash-paired, 307 singletons, 6439 discordant, 174975 orphans, 6574 too large [>5000 bp], 11325771 duplicates)
Reads: 77745922 total, 68295 skipped (flags/unmapped)
Fragments: 38993355 total (38509627 tlen-paired, 2155 hash-paired, 299 singletons, 93630 discordant, 387644 orphans, 39430 too large [>5000 bp], 12580302 duplicates)