Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BAVV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BAVV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BAVV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BAVV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 74997018 total, 50468 skipped (flags/unmapped)
Fragments: 37568999 total (37349352 tlen-paired, 2540 hash-paired, 330 singletons, 10727 discordant, 206050 orphans, 7466 too large [>5000 bp], 12671747 duplicates)
Reads: 81475352 total, 42799 skipped (flags/unmapped)
Fragments: 40815782 total (40591199 tlen-paired, 3142 hash-paired, 383 singletons, 7484 discordant, 213574 orphans, 7473 too large [>5000 bp], 13516343 duplicates)
Reads: 79896329 total, 45859 skipped (flags/unmapped)
Fragments: 40026430 total (39775538 tlen-paired, 3144 hash-paired, 266 singletons, 9404 discordant, 238078 orphans, 17977 too large [>5000 bp], 13555279 duplicates)
Reads: 87903406 total, 81234 skipped (flags/unmapped)
Fragments: 44102843 total (43499877 tlen-paired, 3458 hash-paired, 352 singletons, 117434 discordant, 481722 orphans, 49280 too large [>5000 bp], 14955367 duplicates)