Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_S5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_S5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_S5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_S5Y-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66304806 total, 37383 skipped (flags/unmapped)
Fragments: 33213693 total (33019908 tlen-paired, 4329 hash-paired, 193 singletons, 7145 discordant, 182118 orphans, 11174 too large [>5000 bp], 10454740 duplicates)
Reads: 62384391 total, 46557 skipped (flags/unmapped)
Fragments: 31242470 total (31068629 tlen-paired, 4056 hash-paired, 256 singletons, 8041 discordant, 161488 orphans, 7319 too large [>5000 bp], 9784526 duplicates)
Reads: 72890345 total, 65886 skipped (flags/unmapped)
Fragments: 36564889 total (36087011 tlen-paired, 2319 hash-paired, 234 singletons, 92718 discordant, 382607 orphans, 38761 too large [>5000 bp], 11541037 duplicates)
Reads: 67259579 total, 35509 skipped (flags/unmapped)
Fragments: 33689671 total (33512407 tlen-paired, 2271 hash-paired, 247 singletons, 5821 discordant, 168925 orphans, 6950 too large [>5000 bp], 10358753 duplicates)