Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_6GI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_6GI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_6GI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

The index file is older than the data file: 1241_6GI-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85349204 total, 60936 skipped (flags/unmapped)
Fragments: 42739677 total (42513571 tlen-paired, 3751 hash-paired, 341 singletons, 12877 discordant, 209137 orphans, 9196 too large [>5000 bp], 14462740 duplicates)
Reads: 92140051 total, 51680 skipped (flags/unmapped)
Fragments: 46143148 total (45915080 tlen-paired, 2782 hash-paired, 362 singletons, 9061 discordant, 215863 orphans, 9150 too large [>5000 bp], 15288432 duplicates)
Reads: 90920158 total, 54942 skipped (flags/unmapped)
Fragments: 45537864 total (45277825 tlen-paired, 4063 hash-paired, 264 singletons, 11120 discordant, 244592 orphans, 17172 too large [>5000 bp], 15481543 duplicates)
Reads: 100196039 total, 91918 skipped (flags/unmapped)
Fragments: 50233146 total (49663407 tlen-paired, 3913 hash-paired, 369 singletons, 107957 discordant, 457500 orphans, 47849 too large [>5000 bp], 17127084 duplicates)