Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_94A-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_94A-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_94A-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_94A-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83083804 total, 65983 skipped (flags/unmapped)
Fragments: 41682338 total (41304059 tlen-paired, 3139 hash-paired, 337 singletons, 11107 discordant, 363696 orphans, 8589 too large [>5000 bp], 15273518 duplicates)
Reads: 88656656 total, 52548 skipped (flags/unmapped)
Fragments: 44487459 total (44087780 tlen-paired, 3317 hash-paired, 397 singletons, 8096 discordant, 387869 orphans, 8728 too large [>5000 bp], 15956355 duplicates)
Reads: 88758749 total, 57110 skipped (flags/unmapped)
Fragments: 44534183 total (44110044 tlen-paired, 3631 hash-paired, 280 singletons, 10233 discordant, 409995 orphans, 21774 too large [>5000 bp], 16372161 duplicates)
Reads: 98109556 total, 98705 skipped (flags/unmapped)
Fragments: 49393831 total (48167207 tlen-paired, 4566 hash-paired, 413 singletons, 246315 discordant, 975330 orphans, 99466 too large [>5000 bp], 18093145 duplicates)