Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BAP8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BAP8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BAP8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BAP8-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65511974 total, 54499 skipped (flags/unmapped)
Fragments: 32833099 total (32597884 tlen-paired, 3430 hash-paired, 310 singletons, 8244 discordant, 223231 orphans, 7409 too large [>5000 bp], 11109437 duplicates)
Reads: 70250937 total, 44219 skipped (flags/unmapped)
Fragments: 35213951 total (34967892 tlen-paired, 2973 hash-paired, 342 singletons, 5950 discordant, 236794 orphans, 7976 too large [>5000 bp], 11664840 duplicates)
Reads: 76681468 total, 49177 skipped (flags/unmapped)
Fragments: 38438534 total (38152695 tlen-paired, 7425 hash-paired, 285 singletons, 8341 discordant, 269788 orphans, 12648 too large [>5000 bp], 13022125 duplicates)
Reads: 77367481 total, 75196 skipped (flags/unmapped)
Fragments: 38881268 total (38147539 tlen-paired, 3088 hash-paired, 272 singletons, 143228 discordant, 587141 orphans, 58581 too large [>5000 bp], 13148280 duplicates)