Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_TUO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_TUO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_TUO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_TUO-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68787800 total, 51564 skipped (flags/unmapped)
Fragments: 34457116 total (34252572 tlen-paired, 2377 hash-paired, 312 singletons, 9145 discordant, 192710 orphans, 7513 too large [>5000 bp], 12072763 duplicates)
Reads: 73701814 total, 41863 skipped (flags/unmapped)
Fragments: 36924638 total (36712092 tlen-paired, 2615 hash-paired, 305 singletons, 6404 discordant, 203222 orphans, 7101 too large [>5000 bp], 12670989 duplicates)
Reads: 73285063 total, 44265 skipped (flags/unmapped)
Fragments: 36716275 total (36490329 tlen-paired, 2832 hash-paired, 235 singletons, 7726 discordant, 215153 orphans, 11818 too large [>5000 bp], 12901300 duplicates)
Reads: 80515101 total, 74722 skipped (flags/unmapped)
Fragments: 40407588 total (39819164 tlen-paired, 2580 hash-paired, 318 singletons, 115167 discordant, 470359 orphans, 47940 too large [>5000 bp], 14238943 duplicates)