Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BGCM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BGCM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BGCM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BGCM-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57858368 total, 43521 skipped (flags/unmapped)
Fragments: 29024723 total (28769699 tlen-paired, 2460 hash-paired, 292 singletons, 6347 discordant, 245925 orphans, 5809 too large [>5000 bp], 10171273 duplicates)
Reads: 62363560 total, 38245 skipped (flags/unmapped)
Fragments: 31292449 total (31013692 tlen-paired, 1866 hash-paired, 318 singletons, 4862 discordant, 271711 orphans, 6223 too large [>5000 bp], 10740103 duplicates)
Reads: 62089700 total, 39435 skipped (flags/unmapped)
Fragments: 31155105 total (30866019 tlen-paired, 2625 hash-paired, 259 singletons, 5472 discordant, 280730 orphans, 10522 too large [>5000 bp], 10947360 duplicates)
Reads: 68757312 total, 71989 skipped (flags/unmapped)
Fragments: 34616387 total (33750003 tlen-paired, 2340 hash-paired, 312 singletons, 175953 discordant, 687779 orphans, 70320 too large [>5000 bp], 12088666 duplicates)