Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BU2L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BU2L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BU2L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BU2L-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 90128931 total, 79126 skipped (flags/unmapped)
Fragments: 45159210 total (44846119 tlen-paired, 3310 hash-paired, 430 singletons, 18868 discordant, 290483 orphans, 11149 too large [>5000 bp], 15679011 duplicates)
Reads: 96179681 total, 71148 skipped (flags/unmapped)
Fragments: 48196272 total (47855659 tlen-paired, 5926 hash-paired, 343 singletons, 16144 discordant, 318200 orphans, 17266 too large [>5000 bp], 16863093 duplicates)
Reads: 96875300 total, 66806 skipped (flags/unmapped)
Fragments: 48542118 total (48227416 tlen-paired, 3549 hash-paired, 531 singletons, 13859 discordant, 296763 orphans, 10776 too large [>5000 bp], 16595587 duplicates)
Reads: 105995693 total, 107860 skipped (flags/unmapped)
Fragments: 53197102 total (52418890 tlen-paired, 3613 hash-paired, 388 singletons, 147226 discordant, 626985 orphans, 60501 too large [>5000 bp], 18607826 duplicates)