Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BDXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDXK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79905070 total, 61651 skipped (flags/unmapped)
Fragments: 40029965 total (39779080 tlen-paired, 4075 hash-paired, 314 singletons, 11725 discordant, 234771 orphans, 9287 too large [>5000 bp], 14343314 duplicates)
Reads: 85515965 total, 45951 skipped (flags/unmapped)
Fragments: 42848707 total (42595634 tlen-paired, 2375 hash-paired, 375 singletons, 7854 discordant, 242469 orphans, 7722 too large [>5000 bp], 15055707 duplicates)
Reads: 94027201 total, 86278 skipped (flags/unmapped)
Fragments: 47199126 total (46495035 tlen-paired, 2405 hash-paired, 363 singletons, 134049 discordant, 567274 orphans, 55154 too large [>5000 bp], 16985329 duplicates)
Reads: 93390272 total, 50832 skipped (flags/unmapped)
Fragments: 46797514 total (46487615 tlen-paired, 2698 hash-paired, 304 singletons, 12011 discordant, 294886 orphans, 19801 too large [>5000 bp], 16816535 duplicates)