Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_VY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_VY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_VY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_VY-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86387058 total, 63115 skipped (flags/unmapped)
Fragments: 43298744 total (42982667 tlen-paired, 4724 hash-paired, 444 singletons, 14186 discordant, 296723 orphans, 11811 too large [>5000 bp], 15105300 duplicates)
Reads: 92836219 total, 50920 skipped (flags/unmapped)
Fragments: 46538918 total (46215670 tlen-paired, 2527 hash-paired, 449 singletons, 10030 discordant, 310242 orphans, 9077 too large [>5000 bp], 15947441 duplicates)
Reads: 92148254 total, 54656 skipped (flags/unmapped)
Fragments: 46195564 total (45847293 tlen-paired, 6493 hash-paired, 295 singletons, 11910 discordant, 329573 orphans, 16169 too large [>5000 bp], 16236702 duplicates)
Reads: 101283645 total, 92132 skipped (flags/unmapped)
Fragments: 50881227 total (49983915 tlen-paired, 2827 hash-paired, 381 singletons, 174750 discordant, 719354 orphans, 74397 too large [>5000 bp], 17886953 duplicates)