Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BKRS-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BKRS-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BKRS-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BKRS-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68636216 total, 47308 skipped (flags/unmapped)
Fragments: 34377427 total (34185032 tlen-paired, 2554 hash-paired, 219 singletons, 10315 discordant, 179307 orphans, 6790 too large [>5000 bp], 11368107 duplicates)
Reads: 73167636 total, 43451 skipped (flags/unmapped)
Fragments: 36651682 total (36436957 tlen-paired, 5199 hash-paired, 264 singletons, 8981 discordant, 200281 orphans, 10683 too large [>5000 bp], 12177369 duplicates)
Reads: 74350570 total, 40477 skipped (flags/unmapped)
Fragments: 37240656 total (37045148 tlen-paired, 3428 hash-paired, 310 singletons, 7521 discordant, 184249 orphans, 6670 too large [>5000 bp], 12042027 duplicates)
Reads: 80706749 total, 68407 skipped (flags/unmapped)
Fragments: 40479467 total (39976527 tlen-paired, 2350 hash-paired, 277 singletons, 96072 discordant, 404241 orphans, 41963 too large [>5000 bp], 13495947 duplicates)