Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BLMB-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BLMB-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BLMB-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BLMB-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79177340 total, 58460 skipped (flags/unmapped)
Fragments: 39678990 total (39401215 tlen-paired, 3486 hash-paired, 340 singletons, 13547 discordant, 260402 orphans, 10821 too large [>5000 bp], 13904241 duplicates)
Reads: 85990369 total, 49404 skipped (flags/unmapped)
Fragments: 43096332 total (42808651 tlen-paired, 4195 hash-paired, 334 singletons, 9257 discordant, 273895 orphans, 11265 too large [>5000 bp], 14813469 duplicates)
Reads: 84531050 total, 50867 skipped (flags/unmapped)
Fragments: 42373152 total (42058138 tlen-paired, 6189 hash-paired, 290 singletons, 11338 discordant, 297197 orphans, 15683 too large [>5000 bp], 14945442 duplicates)
Reads: 92748282 total, 85081 skipped (flags/unmapped)
Fragments: 46579088 total (45805638 tlen-paired, 2718 hash-paired, 338 singletons, 150053 discordant, 620341 orphans, 62852 too large [>5000 bp], 16431549 duplicates)