Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BDKW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDKW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDKW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BDKW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85122645 total, 69410 skipped (flags/unmapped)
Fragments: 42669856 total (42342708 tlen-paired, 3987 hash-paired, 328 singletons, 13530 discordant, 309303 orphans, 11577 too large [>5000 bp], 16061859 duplicates)
Reads: 91251329 total, 58998 skipped (flags/unmapped)
Fragments: 45749455 total (45408748 tlen-paired, 3258 hash-paired, 476 singletons, 9862 discordant, 327111 orphans, 10504 too large [>5000 bp], 16849208 duplicates)
Reads: 90988698 total, 61227 skipped (flags/unmapped)
Fragments: 45621733 total (45257732 tlen-paired, 3067 hash-paired, 283 singletons, 12053 discordant, 348598 orphans, 16443 too large [>5000 bp], 17222270 duplicates)
Reads: 100665974 total, 99619 skipped (flags/unmapped)
Fragments: 50587905 total (49623575 tlen-paired, 3679 hash-paired, 421 singletons, 191186 discordant, 769044 orphans, 80005 too large [>5000 bp], 19065017 duplicates)