Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_XNC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_XNC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_XNC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_XNC-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68507396 total, 50542 skipped (flags/unmapped)
Fragments: 34338493 total (34083012 tlen-paired, 2859 hash-paired, 315 singletons, 12200 discordant, 240107 orphans, 10145 too large [>5000 bp], 11252243 duplicates)
Reads: 73267612 total, 42608 skipped (flags/unmapped)
Fragments: 36728097 total (36469707 tlen-paired, 2380 hash-paired, 319 singletons, 8192 discordant, 247499 orphans, 8314 too large [>5000 bp], 11880652 duplicates)
Reads: 80164036 total, 80339 skipped (flags/unmapped)
Fragments: 40273398 total (39559086 tlen-paired, 2490 hash-paired, 347 singletons, 135107 discordant, 576368 orphans, 56808 too large [>5000 bp], 13300302 duplicates)
Reads: 79892580 total, 45562 skipped (flags/unmapped)
Fragments: 40050805 total (39739135 tlen-paired, 3718 hash-paired, 263 singletons, 12240 discordant, 295449 orphans, 20560 too large [>5000 bp], 13231830 duplicates)