Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_6YF-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_6YF-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_6YF-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_6YF-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 85481162 total, 59331 skipped (flags/unmapped)
Fragments: 42811919 total (42575618 tlen-paired, 2828 hash-paired, 370 singletons, 13214 discordant, 219889 orphans, 9126 too large [>5000 bp], 14628424 duplicates)
Reads: 91457300 total, 49728 skipped (flags/unmapped)
Fragments: 45806742 total (45570489 tlen-paired, 3532 hash-paired, 327 singletons, 9379 discordant, 223015 orphans, 8715 too large [>5000 bp], 15395019 duplicates)
Reads: 99764117 total, 54772 skipped (flags/unmapped)
Fragments: 49971371 total (49674229 tlen-paired, 5786 hash-paired, 316 singletons, 13751 discordant, 277289 orphans, 22104 too large [>5000 bp], 17183158 duplicates)
Reads: 100025949 total, 88781 skipped (flags/unmapped)
Fragments: 50164344 total (49562927 tlen-paired, 3248 hash-paired, 384 singletons, 110871 discordant, 486914 orphans, 47889 too large [>5000 bp], 17299394 duplicates)