Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BS56-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BS56-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
The index file is older than the data file: 1241_BS56-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BS56-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70493380 total, 49005 skipped (flags/unmapped)
Fragments: 35298966 total (35117933 tlen-paired, 3029 hash-paired, 324 singletons, 9307 discordant, 168373 orphans, 7570 too large [>5000 bp], 11308871 duplicates)
Reads: 75118452 total, 46077 skipped (flags/unmapped)
Fragments: 37619231 total (37401531 tlen-paired, 4085 hash-paired, 275 singletons, 8302 discordant, 205038 orphans, 19613 too large [>5000 bp], 12101656 duplicates)
Reads: 75821008 total, 41908 skipped (flags/unmapped)
Fragments: 37968873 total (37785539 tlen-paired, 3193 hash-paired, 374 singletons, 6533 discordant, 173234 orphans, 7481 too large [>5000 bp], 11921041 duplicates)
Reads: 82579127 total, 72558 skipped (flags/unmapped)
Fragments: 41405376 total (40933219 tlen-paired, 3037 hash-paired, 308 singletons, 89923 discordant, 378889 orphans, 37507 too large [>5000 bp], 13345295 duplicates)