Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BUMG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUMG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BUMG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUMG-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76223405 total, 56410 skipped (flags/unmapped)
Fragments: 38191384 total (37943959 tlen-paired, 3373 hash-paired, 278 singletons, 10185 discordant, 233589 orphans, 9047 too large [>5000 bp], 13413041 duplicates)
Reads: 81190682 total, 50134 skipped (flags/unmapped)
Fragments: 40687434 total (40402517 tlen-paired, 3828 hash-paired, 291 singletons, 8623 discordant, 272175 orphans, 19073 too large [>5000 bp], 14346084 duplicates)
Reads: 80929327 total, 45637 skipped (flags/unmapped)
Fragments: 40556134 total (40303602 tlen-paired, 2043 hash-paired, 339 singletons, 7229 discordant, 242921 orphans, 7341 too large [>5000 bp], 13958050 duplicates)
Reads: 89273956 total, 90102 skipped (flags/unmapped)
Fragments: 44822490 total (44090428 tlen-paired, 4107 hash-paired, 337 singletons, 145479 discordant, 582139 orphans, 60675 too large [>5000 bp], 15780310 duplicates)