Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_063-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_063-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_063-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_063-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93130183 total, 65035 skipped (flags/unmapped)
Fragments: 46661027 total (46368042 tlen-paired, 3871 hash-paired, 469 singletons, 13790 discordant, 274855 orphans, 9209 too large [>5000 bp], 16620752 duplicates)
Reads: 99448812 total, 53053 skipped (flags/unmapped)
Fragments: 49827710 total (49533422 tlen-paired, 3676 hash-paired, 363 singletons, 9301 discordant, 280948 orphans, 10825 too large [>5000 bp], 17446382 duplicates)
Reads: 108661904 total, 57734 skipped (flags/unmapped)
Fragments: 54455100 total (54092755 tlen-paired, 5486 hash-paired, 376 singletons, 14159 discordant, 342324 orphans, 18335 too large [>5000 bp], 19487599 duplicates)
Reads: 108805262 total, 96221 skipped (flags/unmapped)
Fragments: 54618844 total (53800054 tlen-paired, 3665 hash-paired, 395 singletons, 154520 discordant, 660210 orphans, 65979 too large [>5000 bp], 19603287 duplicates)