Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BUX3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUX3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUX3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BUX3-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73715673 total, 55986 skipped (flags/unmapped)
Fragments: 36926124 total (36703124 tlen-paired, 3211 hash-paired, 340 singletons, 10504 discordant, 208945 orphans, 8362 too large [>5000 bp], 11895504 duplicates)
Reads: 79210200 total, 50749 skipped (flags/unmapped)
Fragments: 39678274 total (39449798 tlen-paired, 3361 hash-paired, 380 singletons, 7158 discordant, 217577 orphans, 10430 too large [>5000 bp], 12587718 duplicates)
Reads: 86053862 total, 83864 skipped (flags/unmapped)
Fragments: 43186826 total (42564967 tlen-paired, 4029 hash-paired, 300 singletons, 116312 discordant, 501218 orphans, 48932 too large [>5000 bp], 14009660 duplicates)
Reads: 85687240 total, 53337 skipped (flags/unmapped)
Fragments: 42929182 total (42648250 tlen-paired, 6010 hash-paired, 283 singletons, 10463 discordant, 264176 orphans, 19999 too large [>5000 bp], 13903241 duplicates)