Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_JW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_JW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_JW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_JW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69759929 total, 55036 skipped (flags/unmapped)
Fragments: 34944093 total (34731931 tlen-paired, 2758 hash-paired, 287 singletons, 10751 discordant, 198366 orphans, 7680 too large [>5000 bp], 12122023 duplicates)
Reads: 74252038 total, 47093 skipped (flags/unmapped)
Fragments: 37196261 total (36981665 tlen-paired, 2409 hash-paired, 382 singletons, 7448 discordant, 204357 orphans, 8581 too large [>5000 bp], 12629132 duplicates)
Reads: 81295104 total, 53908 skipped (flags/unmapped)
Fragments: 40725349 total (40470344 tlen-paired, 5464 hash-paired, 282 singletons, 10947 discordant, 238312 orphans, 14546 too large [>5000 bp], 14145732 duplicates)
Reads: 81760878 total, 81640 skipped (flags/unmapped)
Fragments: 41026853 total (40451758 tlen-paired, 1905 hash-paired, 380 singletons, 108204 discordant, 464606 orphans, 45259 too large [>5000 bp], 14257043 duplicates)