Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_GBH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_GBH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_GBH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_GBH-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71775995 total, 51627 skipped (flags/unmapped)
Fragments: 35977213 total (35714923 tlen-paired, 3388 hash-paired, 337 singletons, 8420 discordant, 250145 orphans, 10212 too large [>5000 bp], 12726115 duplicates)
Reads: 76878166 total, 47337 skipped (flags/unmapped)
Fragments: 38540231 total (38261753 tlen-paired, 3358 hash-paired, 244 singletons, 6989 discordant, 267887 orphans, 9249 too large [>5000 bp], 13700356 duplicates)
Reads: 77631538 total, 45402 skipped (flags/unmapped)
Fragments: 38920120 total (38638533 tlen-paired, 2777 hash-paired, 420 singletons, 6088 discordant, 272302 orphans, 9309 too large [>5000 bp], 13469758 duplicates)
Reads: 84634099 total, 76641 skipped (flags/unmapped)
Fragments: 42542705 total (41709179 tlen-paired, 3120 hash-paired, 307 singletons, 166302 discordant, 663797 orphans, 68076 too large [>5000 bp], 15090270 duplicates)