Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_9JV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_9JV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_9JV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_9JV-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 97594650 total, 68883 skipped (flags/unmapped)
Fragments: 48885893 total (48589392 tlen-paired, 4519 hash-paired, 401 singletons, 14551 discordant, 277030 orphans, 15706 too large [>5000 bp], 17713442 duplicates)
Reads: 103573166 total, 53066 skipped (flags/unmapped)
Fragments: 51891114 total (51594565 tlen-paired, 3031 hash-paired, 474 singletons, 10054 discordant, 282990 orphans, 10668 too large [>5000 bp], 18485500 duplicates)
Reads: 113282051 total, 58392 skipped (flags/unmapped)
Fragments: 56759937 total (56409565 tlen-paired, 5126 hash-paired, 346 singletons, 15017 discordant, 329883 orphans, 17007 too large [>5000 bp], 20686915 duplicates)
Reads: 113887522 total, 97030 skipped (flags/unmapped)
Fragments: 57156601 total (56350668 tlen-paired, 4060 hash-paired, 415 singletons, 151499 discordant, 649959 orphans, 63832 too large [>5000 bp], 20869954 duplicates)