Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_GPK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_GPK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_GPK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_GPK-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89545845 total, 61318 skipped (flags/unmapped)
Fragments: 44876495 total (44571505 tlen-paired, 4183 hash-paired, 436 singletons, 13046 discordant, 287325 orphans, 9649 too large [>5000 bp], 16370214 duplicates)
Reads: 95566773 total, 48572 skipped (flags/unmapped)
Fragments: 47898312 total (47590155 tlen-paired, 2265 hash-paired, 441 singletons, 8595 discordant, 296856 orphans, 9437 too large [>5000 bp], 17189753 duplicates)
Reads: 104538551 total, 54822 skipped (flags/unmapped)
Fragments: 52398499 total (52023533 tlen-paired, 3455 hash-paired, 331 singletons, 13240 discordant, 357940 orphans, 22501 too large [>5000 bp], 19214283 duplicates)
Reads: 105136941 total, 97134 skipped (flags/unmapped)
Fragments: 52805402 total (51916899 tlen-paired, 3204 hash-paired, 396 singletons, 169986 discordant, 714917 orphans, 72158 too large [>5000 bp], 19398801 duplicates)