Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1241_BNP0-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BNP0-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BNP0-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BNP0-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66054535 total, 49412 skipped (flags/unmapped)
Fragments: 33093327 total (32883109 tlen-paired, 3386 hash-paired, 261 singletons, 9707 discordant, 196864 orphans, 7797 too large [>5000 bp], 10623018 duplicates)
Reads: 70365498 total, 43248 skipped (flags/unmapped)
Fragments: 35257860 total (35020628 tlen-paired, 3803 hash-paired, 235 singletons, 8273 discordant, 224921 orphans, 15843 too large [>5000 bp], 11399748 duplicates)
Reads: 70903907 total, 39915 skipped (flags/unmapped)
Fragments: 35527818 total (35314175 tlen-paired, 1770 hash-paired, 315 singletons, 7103 discordant, 204455 orphans, 6563 too large [>5000 bp], 11226149 duplicates)
Reads: 77234847 total, 72502 skipped (flags/unmapped)
Fragments: 38766815 total (38182955 tlen-paired, 2779 hash-paired, 267 singletons, 113360 discordant, 467454 orphans, 48218 too large [>5000 bp], 12523394 duplicates)