Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1241_BHBW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.baiThe index file is older than the data file: 1241_BHBW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1241_BHBW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1241_BHBW-N1-BDNA-1_A23TY7KLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79421219 total, 60294 skipped (flags/unmapped)
Fragments: 39774932 total (39553287 tlen-paired, 5043 hash-paired, 360 singletons, 10179 discordant, 206063 orphans, 8742 too large [>5000 bp], 13405918 duplicates)
Reads: 84527201 total, 48925 skipped (flags/unmapped)
Fragments: 42340482 total (42095222 tlen-paired, 3220 hash-paired, 249 singletons, 8964 discordant, 232827 orphans, 15194 too large [>5000 bp], 14360852 duplicates)
Reads: 85193019 total, 44048 skipped (flags/unmapped)
Fragments: 42674657 total (42449511 tlen-paired, 2338 hash-paired, 349 singletons, 7089 discordant, 215370 orphans, 7688 too large [>5000 bp], 14151494 duplicates)
Reads: 92701290 total, 79869 skipped (flags/unmapped)
Fragments: 46505282 total (45897772 tlen-paired, 2531 hash-paired, 352 singletons, 117638 discordant, 486989 orphans, 49099 too large [>5000 bp], 15812306 duplicates)